Selfhosted
A place to share alternatives to popular online services that can be self-hosted without giving up privacy or locking you into a service you don't control.
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For manga, I use Kavita and connect to it with Tachiyomi on Android. I organize these files by hand outside of any system. I prefer this because it synchronizes and works well.
For regular books, I have Readarr synced with Calibre, which I then have Calibre-Web connected to, which then exposes an endpoint for my devices using opds with apps like moonreader+ on Android or an e-ink device running koreader.
I prefer my regular book setup for the organization Calibre brings along with the flexibility of Calibre-Web.
Wait wait wait wait, you can connect Tachiyomi to your own manga host? Well... shit. I know what I'm going to be doing next.
For komga you can and it and enter your komga domain, username and password for access.
I personally use FMD2 to scrape manga chapters