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Oh no.
Unfortunately I have a lot of experience with this: attaching permanent array members via USB is a bad idea. OP, if it's not too late, and assuming you haven't already and decided to double down on yolo, I'd recommend reading about the downsides of this approach. It is easy to find relevant discussions (and catastrophes) in r/zfs.
Thunderbolt enclosures are a bit more expensive, but they won't periodically fuck up your shit just because.
I imagine if someone had to do it this way for whatever reason, Thunderbolt would be more reliable? Assuming it’s true Thunderbolt using a SATA bridge?
Yes - and unless you treat each enclosure as its own failure domain, it will still be a compromise, but it's a lot better.