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Honestly, not entirely certain I did it right, but it was super easy. I literally spun up Komodo, spun down Portainer without shutting any of the other containers/stacks down, then added the same stacks back through the GUI option into Komodo with the same exact compose/title/env options. It literally just recognized that the containers that were already running on my server were the correct ones and "added" them back to the stack in Komodo. I vaguely remember reading that there is a more "correct" way to do it, but I only read about it after the fact.