I used to use Sigil to clean up PDF conversions. It supports all the modern epub variants. It's more or less just an HTML editor.
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Definitely agree with everyone else on Sigil. Perhaps you’d like to take a look at this old article: 17 Open source ePub and eBook creators
Great, this is helpful!
Sigil is the best by a huge amount. I use it to fix/cleanup my extremely large ebook library.
I agree. I use it all the time. Very easy to use, and can do anything you'd want. Also, it supports plugins.
If your ebooks to edit are CBZ/CBR ones, you can rename their extensions to .zip and .rar, respectively, and extract their images to edit on an image editor of your choice. If an ebook uses HTML (iirc e.g. epub internally), you can edit that too after extraction, then with a text editor of your choice.