Um... they are, and have been for almost 20 years, since the Wii. Or the N64 depending on how you look at it.
What did you think Virtual Console was? How about the NES and SNES mini? What about the "Nintendo Game Pass" or whatever they're calling it?
Animal Crossing's original Japan release had NES games in it, and so did the GC rerelease/psuedosequel we got internationally too.
Even better: During the Wii era, the Wiis at the Nintendo Store in New York City ran official Nintendo made software to load games off a connected hard drive, so you could play multiple of their new releases without workers having to switch discs.
It has always been about attempts to prevent piracy and keep control over how people access their games for Nintendo, and they are roughly 10 years behind the curve on modern tech trends.
Either stop supporting them or get used to it.
Most AI agents don't have that level of access to the systems they are running on. What purpose would anyone have to teach it how to dowload a repo, let alone allow it to arbitrarily run excutables based off input data (distinctly not instructions)?
There are ways to break out of the input data context and issue commands, but you've been watching too many movies. Better to just do things like hide links to a page only a bot would find and auto block anything that requests the hidden page.