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Since nobody has responded to the ACME / Let's Encrypt part of the question yet, I'll chime in: I also use Traefik as a reverse proxy (and an ACME client), one unified instance per machine. (There are some exceptions, like for Mailu that requires its own nginx reverse proxy.) But for Let's Encrypt, I recently switched from the TLS challenge to the DNS challenge. That required switching my DNS server from CoreDNS to PowerDNS, but thus far it seems totally worth it. Now I can easily get TLS certs for servers on my private network at home without opening them up to the internet for HTTP/TLS challenges.
Can you expand on more detail on how your TLS certs work? Looking to do similar.
I am just running the normal nginx image with
/etc/letsencrypt:/etc/ssl/privateas volume.certbotdoes the rest. If you need help with the exact config just search for relevant keywords, there are tons of good tutorials