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I use readeck to store webpages, mostly articles I like. I tag them, I share them, has a firefox extension so I can use it both at home and on the go. I do self-host readeck, that might be the biggest snag?
For everything else I use LogSeq. I read a book, i make a page, paste in the cover image, some details, and thoughts. Well, nowadays that happens automatically via a sync with my e-reader, but just to give you an idea. The daily notes are for everyday notekeeping: I do a cleanup here, I had a doctors appointment there, some good quote I found, an idea i had. Just the immediate dropzone for anything, but I do take care to use appropriate tags. Then in quieter times, I can start sifting through these, like a gardener pruning his plants: copying notes to pages they might belong to, or create new pages, link them up. And at the end, one can gape at the Graph showing all these connections, which in turn encourages another round of pruning. Ad infinitum.
EDIT: This article seems to give a good overview.
EDIT2: Quick video (youtube)
Thank you so much! Sounds like a pretty cool system.